phylosamp - Sample Size Calculations for Molecular and Phylogenetic Studies
Implements novel tools for estimating sample sizes needed for phylogenetic studies, including studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).
Last updated 2 years ago
phylogeneticssampling
6.65 score 12 stars 25 scripts 199 downloadsIDSpatialStats - Estimate Global Clustering in Infectious Disease
Implements various novel and standard clustering statistics and other analyses useful for understanding the spread of infectious disease.
Last updated 4 months ago
2.69 score 1 stars 33 scripts 258 downloads